DreEX6034743 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2496081-2501237:+
Coord C1 exon
chr9:2496081-2496167
Coord A exon
chr9:2499609-2499748
Coord C2 exon
chr9:2501142-2501237
Length
140 bp
Sequences
Splice sites
3' ss Seq
GAAACTTTTGTTGTTTTCAGGTC
3' ss Score
10.26
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CATGCCAGATGTGCGAGTGTGCGTGCGCTCTTCCTCAGACCAGACCTGATGTTACAAACACCAAAGAGGAAGTGTCCATACAAACAG
Seq A exon
GTCAGTGTGGTCAGGAATGTACATCCACGCACTGTTTGCTGGTTGAAGAGGAGGAGAAGGAGACGGAGAGACAGAACACAGACATTCAGTCAACAAGACATGTGCTCATGTGTCTGATACTGACCGTCACTTCACTCGCT
Seq C2 exon
AATCTGTGCAGTTGTCTATGGTGGCTCTTTAATAAAGATCCGGGTCGTCTGTATCTGGAGCTGCAGTTCTTCTGTGTTGTGGCCAATTACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGATGTGCGAGTGTG
R:
TCCGTAATTGGCCACAACACA
Band lengths:
179-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]