RnoEX0039620 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60061118-60065995:-
Coord C1 exon
chr3:60065891-60065995
Coord A exon
chr3:60062916-60063052
Coord C2 exon
chr3:60061118-60061213
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCGCTGTCTTGTAGCCG
3' ss Score
7.92
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTTGCTGTTCTTGCTCCTTGGGAAATGGTGAATTACGCTGTCCATCAATACAGCCAGGAACGAACTCAAGTGCTAGCAGGCCTAGGCCTTCTTCCTTTGAGAAAA
Seq A exon
CCGACCAGTGTGTGAGCCGCTGTGACTCCCAGAGCTGCATCCTCGCCCAGGAAGAAGAGCAGTACCTGCAGAGTGGAGACCCGCAGCTGACCCGTCACGTTCTGCTGTGCCTGCTGCTCATCATCGGCCTGTTTGCT
Seq C2 exon
AATCTCTCTAGCTGTCTCTGGTGGCTCTTTAACCACGAGACAGGACGGCTCTACGTTGAATTACAGTTTTTCTGTGCTGTGTTTAACTTCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'21-17,'21-16,22-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTTCTTGCTCCTTGGG
R:
TGGCCGAAGTTAAACACAGCA
Band lengths:
199-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]