Special

DreEX0037897 @ danRer10

Exon Skipping

Gene
ENSDARG00000011020 | hnrnpa1a
Description
heterogeneous nuclear ribonucleoprotein A1a [Source:ZFIN;Acc:ZDB-GENE-040426-1546]
Coordinates
chr11:2066794-2071269:-
Coord C1 exon
chr11:2071096-2071269
Coord A exon
chr11:2070814-2070954
Coord C2 exon
chr11:2066794-2066902
Length
141 bp
Sequences
Splice sites
3' ss Seq
GAATTACTGAATTTTTGCAGGAA
3' ss Score
6.07
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCGGCTATGGAGGAGGCGGCCCTAATTATGGTGGTAACCGTGGTTACGGCAGTGGTGGGGGTGGAGGCGGCGGCGGTGGCTATGGAAACCAGGGTGGTGGCTATGGTGGCGGCGGCTATGATAACTACAACAACAATGGTGGTGGTGGAGGAGGAGGAGGCAACTTTGGAGGAG
Seq A exon
GAAACTTCGGAGGTGGCGGAGACTACAATGACTTTGGAAACTACAATAATCAATCTTCCTCTAACTACGGCCCAATGAAGGGAGGAAACTATGGCGGCGGCGGAGGTGGTGGTGGAAGGAGCGGTGGTGGACCATATGGTG
Seq C2 exon
GTGGCTATGGAGGAGGCTCTGGAGGAGGCGGTGGTTATGGAGGAGGATCTGGTGGTGGTGGTGGAGGATATGGCGGAGGCTCTGGCGGACGGAGGTTTTAGATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011020-'22-21,'22-18,27-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.169 A=0.542 C2=0.364
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGGCCCTAATTATGGTG
R:
AGAGCCTCCGCCATATCCTC
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]