GgaEX1028917 @ galGal4
Exon Skipping
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15329954-15331542:-
Coord C1 exon
chr7:15331390-15331542
Coord A exon
chr7:15330119-15330244
Coord C2 exon
chr7:15329954-15330025
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTCGTGAATTTATTTCAGGTA
3' ss Score
8
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
TCAAAGGTGGCAACTATGGAGGTGGTCCTGGCTATGGCAGCAGAGGGGGTTATGGTGGTGGTGGAGGACCAGGATATGGAAACCCAGGTGGTGGATATGGAGGTGGAGGAGGAGGATATGATGGCTACAATGAAGGAGGCAATTTTGGAGGTG
Seq A exon
GTAATTATGGAGGCAGTGGAAACTACAATGACTTTGGTAACTACAGTGGACAGCAGCAGTCCAATTACGGTCCCATGAAAGGTGGTGGCAGTTTTGGTGGTAGAAGTTCAGGCAGTCCCTATGGTG
Seq C2 exon
GTGGTTATGGATCTGGAAGTGGAAGTGGGGGCTATGGTGGTAGAAGATTCTAAAAATGCTACCAGAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-'31-28,'31-27,37-28
Average complexity
C1
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.767 C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000038715fB8255
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGCAACTATGGAGGTG
R:
AGCATTTTTAGAATCTTCTACCACCA
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]