MmuEX6004379 @ mm9
Exon Skipping
Gene
ENSMUSG00000004980 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
Coordinates
chr6:51413410-51414546:-
Coord C1 exon
chr6:51414427-51414546
Coord A exon
chr6:51414088-51414210
Coord C2 exon
chr6:51413410-51413492
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTATTCCAATTCTTTTACAGGAA
3' ss Score
10.04
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
Seq A exon
GAAATTATGGAAGTGGAAGTTACAATGATTTTGGAAATTATAACCAGCAGCCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGGGGTAGCAGGAACATGGGAGGACCATATGGTGGAG
Seq C2 exon
GGAACTATGGTCCTGGAGGAAGTGGAGGAAGTGGTGGCTATGGTGGAAGGAGCAGATATTAAGCTTCTTCCTACTTACCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004980-'12-19,'12-18,13-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.766 C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
PF116273=HnRNPA1=WD(100=90.5)
C2:
PF116273=HnRNPA1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATTTTGGAGGTAGCCC
R:
CCATGGTAAGTAGGAAGAAGCT
Band lengths:
202-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: