HsaEX6007542 @ hg38
Exon Skipping
Gene
ENSG00000122566 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
Coordinates
chr7:26192495-26193694:-
Coord C1 exon
chr7:26193575-26193694
Coord A exon
chr7:26193251-26193373
Coord C2 exon
chr7:26192495-26192577
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTATTCCAATTTTTTAATAGGAA
3' ss Score
7.95
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGCAATTTTGGAGGTAGCCCCGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
Seq A exon
GAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAG
Seq C2 exon
GAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATACTGAGCTTCTTCCTATTTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122566-'36-47,'36-41,38-47
Average complexity
S
Mappability confidence:
90%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.638 A=0.624 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATTTTGGAGGTAGCCC
R:
CCATGGCAAATAGGAAGAAGCTCA
Band lengths:
202-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains