GgaEX1028912 @ galGal3
Exon Skipping
Gene
ENSGALG00000011036 | Q5ZME1_CHICK
Description
NA
Coordinates
chr2:32117933-32119194:-
Coord C1 exon
chr2:32119075-32119194
Coord A exon
chr2:32118715-32118837
Coord C2 exon
chr2:32117933-32118015
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTATTGATTATTCAGGCA
3' ss Score
5.77
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGGCAACTTCGGTGGCAGTCCTGGTTACGGAGGAGGAAGAGGAGGATATGGTGGAGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTATGGAGGTGGCTATGACAACTATGGAGGAG
Seq A exon
GCAATTATGGAAGTGGAAACTACAACGACTTTGGAAACTACAACCAGCAGCCTTCTAATTATGGTCCAATGAAGAGTGGAAATTTTGGTGGCAGCAGGAACATGGGGGGACCATATGGTGGAG
Seq C2 exon
GAAACTATGGTCCCGGTGGCAGTGGAGGAAGTGGTGGATATGGAGGGAGAAGCCGTTACTGAGCTTCTGCAAGCTTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036-'21-16,'21-15,23-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.738 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCGGTGGCAGTCCTG
R:
GCAGAAGCTCAGTAACGGCTT
Band lengths:
186-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]