MmuEX6004379 @ mm10
Exon Skipping
Gene
ENSMUSG00000004980 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
Coordinates
chr6:51463411-51465241:-
Coord C1 exon
chr6:51465179-51465241
Coord A exon
chr6:51464089-51464211
Coord C2 exon
chr6:51463411-51463493
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTATTCCAATTCTTTTACAGGAA
3' ss Score
10.04
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGGATACGGAAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAG
Seq A exon
GAAATTATGGAAGTGGAAGTTACAATGATTTTGGAAATTATAACCAGCAGCCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGGGGTAGCAGGAACATGGGAGGACCATATGGTGGAG
Seq C2 exon
GGAACTATGGTCCTGGAGGAAGTGGAGGAAGTGGTGGCTATGGTGGAAGGAGCAGATATTAAGCTTCTTCCTACTTACCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004980-'24-43,'24-34,36-43
Average complexity
C1
Mappability confidence:
85%=86=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.839 C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
PF116273=HnRNPA1=PU(94.7=87.8)
C2:
PF116273=HnRNPA1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAGTGGACGTGGATTTG
R:
CCATGGTAAGTAGGAAGAAGCT
Band lengths:
140-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types