GgaEX1028912 @ galGal4
Exon Skipping
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32317979-32319240:-
Coord C1 exon
chr2:32319121-32319240
Coord A exon
chr2:32318761-32318883
Coord C2 exon
chr2:32317979-32318061
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTATTGATTATTCAGGCA
3' ss Score
5.77
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGGCAACTTCGGTGGCAGTCCTGGTTACGGAGGAGGAAGAGGAGGATATGGTGGAGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTATGGAGGTGGCTATGACAACTATGGAGGAG
Seq A exon
GCAATTATGGAAGTGGAAACTACAACGACTTTGGAAACTACAACCAGCAGCCTTCTAATTATGGTCCAATGAAGAGTGGAAATTTTGGTGGCAGCAGGAACATGGGGGGACCATATGGTGGAG
Seq C2 exon
GAAACTATGGTCCCGGTGGCAGTGGAGGAAGTGGTGGATATGGAGGGAGAAGCCGTTACTGAGCTTCTGCAAGCTTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036_MULTIEX2-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.738 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCGGTGGCAGTCCTG
R:
GCAGAAGCTCAGTAACGGCTT
Band lengths:
186-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]