DreEX6034727 @ danRer10
Exon Skipping
Gene
ENSDARG00000059351 | hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
Coordinates
chr9:1691371-1693216:-
Coord C1 exon
chr9:1693163-1693216
Coord A exon
chr9:1692104-1692247
Coord C2 exon
chr9:1691371-1691448
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATTTGTACCTTCACTGCAGGTA
3' ss Score
8.39
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GCGGCAACTATGGTGGTGGTCCTGGTGGATATGGAGGCGGCCGCGGAGGATACG
Seq A exon
GTAACTTTGGTGGTGGTGGAGGCAGCAGCGGTGGAGGGGGAGGAGGAAATTACAATGACTTTGGGAATTACGGAGGACAGCAATCCAACTTTGGCCCCATGAAGGGAAATAACTTCGGTGGGAGAAACTCTGGACCTTACGGAG
Seq C2 exon
GTGGAGGATACGGCTCTGGTGGCGGAGGCGGAGGCGGAGGTTACGGCTCCAGGAGATATTAGCAGATTAATTGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059351-'8-10,'8-9,11-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.888 C2=0.293
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAACTATGGTGGTGGTC
R:
TAATCTGCTAATATCTCCTGGAGCC
Band lengths:
122-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]