GgaEX1028917 @ galGal3
Exon Skipping
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16932235-16933823:-
Coord C1 exon
chr7:16933671-16933823
Coord A exon
chr7:16932400-16932525
Coord C2 exon
chr7:16932235-16932306
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTCGTGAATTTATTTCAGGTA
3' ss Score
8
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
TCAAAGGTGGCAACTATGGAGGTGGTCCTGGCTATGGCAGCAGAGGGGGTTATGGTGGTGGTGGAGGACCAGGATATGGAAACCCAGGTGGTGGATATGGAGGTGGAGGAGGAGGATATGATGGCTACAATGAAGGAGGCAATTTTGGAGGTG
Seq A exon
GTAATTATGGAGGCAGTGGAAACTACAATGACTTTGGTAACTACAGTGGACAGCAGCAGTCCAATTACGGTCCCATGAAAGGTGGTGGCAGTTTTGGTGGTAGAAGTTCAGGCAGTCCCTATGGTG
Seq C2 exon
GTGGTTATGGATCTGGAAGTGGAAGTGGGGGCTATGGTGGTAGAAGATTCTAAAAATGCTACCAGAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-'24-25,'24-24,28-25=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.773 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
PF116273=HnRNPA1=PU(94.9=86.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGCAACTATGGAGGTG
R:
AGCATTTTTAGAATCTTCTACCACCA
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]