DreEX0037905 @ danRer10
Exon Skipping
Gene
ENSDARG00000036675 | hnrnpa1b
Description
heterogeneous nuclear ribonucleoprotein A1b [Source:ZFIN;Acc:ZDB-GENE-030912-14]
Coordinates
chr23:36209428-36210029:+
Coord C1 exon
chr23:36209428-36209520
Coord A exon
chr23:36209607-36209798
Coord C2 exon
chr23:36209880-36210029
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTGGCATTTTCTAGGTG
3' ss Score
10.12
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGGAAGAGGAAATAACTTTGGAGGTGGTGGTGGCGGCGGTGGCTATGGAGGAGGCGGTGACTGCTACAACAACAACAATGGATTTGGAGGAG
Seq A exon
GTGGCTACGGCGGTGGTGGCGGCAATGGTGGTGGCAGTCCTGGCAACTATGGAGGCAACCGTGGATATGGAGGAGGCGGTGGAGGAGGACATGGTTATGGCAACCAGGGAGGAGGCTATGGTGGTGGCAACAGTGGTGGCGGTGGTGGTGGCTATAATAACTACAACAATGGCAATGGAAACTTTGGAGGTG
Seq C2 exon
GTAACTTTGGAGGTGGTGGTGGTGGTGGCGGCAACAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036675-'13-25,'13-18,20-25
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=0.447 C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF116273=HnRNPA1=PU(94.4=68.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGGAAATAACTTTGGAGGTG
R:
CACCATATGGGCCACTGTTTCT
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]