DreEX0037906 @ danRer10
Exon Skipping
Gene
ENSDARG00000036675 | hnrnpa1b
Description
heterogeneous nuclear ribonucleoprotein A1b [Source:ZFIN;Acc:ZDB-GENE-030912-14]
Coordinates
chr23:36209607-36210350:+
Coord C1 exon
chr23:36209607-36209798
Coord A exon
chr23:36209880-36210029
Coord C2 exon
chr23:36210263-36210350
Length
150 bp
Sequences
Splice sites
3' ss Seq
GGGTGTATTATCAATTCAAGGTA
3' ss Score
4.78
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGGCTACGGCGGTGGTGGCGGCAATGGTGGTGGCAGTCCTGGCAACTATGGAGGCAACCGTGGATATGGAGGAGGCGGTGGAGGAGGACATGGTTATGGCAACCAGGGAGGAGGCTATGGTGGTGGCAACAGTGGTGGCGGTGGTGGTGGCTATAATAACTACAACAATGGCAATGGAAACTTTGGAGGTG
Seq A exon
GTAACTTTGGAGGTGGTGGTGGTGGTGGCGGCAACAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTG
Seq C2 exon
GTGGCTATGGAGGTGGATCTAGTGGTAGTGGAGGAGGCGGCAGTGGTTATGGAGGTGGCTCTGGCGGTAGACGGTTTTAAGCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036675-'20-31,'20-25,23-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.809 C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
PF116273=HnRNPA1=PU(94.4=68.0)
C2:
PF116273=HnRNPA1=PD(5.4=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCCTGGCAACTATGGAG
R:
AGCTTAAAACCGTCTACCGCC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]