DreEX0040050 @ danRer10
Exon Skipping
Gene
ENSDARG00000012824 | itga3b
Description
integrin, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-050411-55]
Coordinates
chr12:5586940-5628232:-
Coord C1 exon
chr12:5628048-5628232
Coord A exon
chr12:5590874-5591010
Coord C2 exon
chr12:5586940-5587016
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTGTTCCTCCACAGGCT
3' ss Score
12.01
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
GGAATATTAAATATGGCCGGAAAGTCTCTGCACTTGTGCGTCTTCGTAATTTGCGCGATTCAAACGAACACCGGATTTAACATTGACGTGCAGTTCCCGGTTATCAAAGAAGGAAAAACCAAGGGCAGTCTATTTGGATTCTCAGTGGCACTGCACAAACAGACCGAAAAGGCGAAGAAGAACTT
Seq A exon
GCTGTTAGTCGGAGCCCCTCAAGAAAAAGCCCACCCTCAACTCAGTAAATTTAAAATTAATGAAACTGGAGCCGTGTATTATTGTCCCATCACTGTTAACCAGGATGACTGCGGAAGCATGGACCTCATCAGTCCAC
Seq C2 exon
CAAAGTCGACGGATATGCTGGAGGGAATGTGGCTAGGAGTGACCGTGGCCAGTCAGAGGAATGGAGGCCGTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012824_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCCGGAAAGTCTCTGCA
R:
GGCCTCCATTCCTCTGACTGG
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]