GgaEX7005972 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17235206-17252865:-
Coord C1 exon
chr7:17252825-17252865
Coord A exon
chr7:17235524-17235651
Coord C2 exon
chr7:17235206-17235285
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTGTTTTCCTATAGGTT
3' ss Score
12.51
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
NNGGCCATGCACCGGCAGCTGCAGCCGCAGGAGAAACGGCT
Seq A exon
GTTGCTGGTTGGAGCTCCTCGGGAAAAGGCCTTTCCATCCCAACAAGCCAACAGAACGGGAGGGCTGTACAGCTGTGACATCACATCTTCAGATACGCGCTGCACGCGTGTTGTGTTTGATGAAGACA
Seq C2 exon
CTGACCCAAAGATGGAGAGCAAAGAAGACCAATGGATGGGTGTAACTGTCCAAAGTCAGGGGCCAGGAGGAAACGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'1-6,'1-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.364 C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000038606fB8518
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]