MmuEX0024618 @ mm10
Exon Skipping
Gene
ENSMUSG00000027111 | Itga6
Description
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
Coordinates
chr2:71786929-71818560:+
Coord C1 exon
chr2:71786929-71787320
Coord A exon
chr2:71816630-71816754
Coord C2 exon
chr2:71818481-71818560
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTTTTGTCACCAGGTT
3' ss Score
11.08
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
AGAGAACAACGGGCTCATTGAGCAGCAGCTAGCTGCGGGCGTGGGGGAGCGGCCGCACAGTGAGCGTGAGCCGGCCGGGGGTGGGGCCGCGCGCAGGGGCGACCGAGGCCAAGTGGCCGCAGCGGCGCGCCAGGCAGCCCGGCCCCGGCCCCGAGCCCGCGCGCACAGAGGCCGCAGCAGCTCCGCGGGTCCCTCCCACCGCGCGCGCCCATGGCGGTCGCGGGCCAGTTGTGCCTGCTCTACCTGTCCGCGGGGCTTCTAGCCCGGCTGGGTACAGCCTTCAACCTGGACACCCGCGAGGACAACGTGATCCGGAAATCGGGGGATCCCGGGAGCCTCTTCGGCTTCTCGCTCGCCATGCACTGGCAGTTGCAGCCGGAGGACAAGCGGCT
Seq A exon
GTTGCTTGTGGGGGCACCTCGGGCAGAAGCACTCCCGCTGCAGAGGGCGAACAGAACAGGGGGCCTGTACAGCTGTGACATCACCTCCCGGGGACCTTGTACACGGATTGAATTTGATAATGACG
Seq C2 exon
CTGATCCTATGTCAGAAAGCAAGGAAGACCAGTGGATGGGAGTCACTGTTCAGAGCCAAGGTCCAGGGGGCAAAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027111-'5-11,'5-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.116 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGTGCCTGCTCTACCTG
R:
ACTTTGCCCCCTGGACCTT
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types