RnoEX0045037 @ rn6
Exon Skipping
Gene
ENSRNOG00000001518 | Itga6
Description
integrin subunit alpha 6 [Source:RGD Symbol;Acc:621633]
Coordinates
chr3:58443101-58478049:+
Coord C1 exon
chr3:58443101-58443475
Coord A exon
chr3:58476130-58476254
Coord C2 exon
chr3:58477970-58478049
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTTACTCTTTTGTCACCAGGTT
3' ss Score
9.88
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTGAGCGGCTGCTAGCTACCGGCGTGGGGGAGCTGCCGGACAGAGAGCGCGAGCCGGCCGGGGGTGGGGCCGCGCGCAGGGGCGACCCAGGCCAAGTGGCCACAGCGGCGCGCCAGGGAGCCCGGCCCCGGCCCCGAGCCCGCGCGCACAGAGGCCGTAGCAGCTCCGCGGGTCCCTCCCACCGCGCGCGCCCATGGCGGTCGCCGGCCAGTTGTGCTTGCTCTACCTGTCCGCAGGGCTTCTGGCCCGGCTGAGCACAGCTTTCAACCTGGATACCCGCGAGGACAACGTGATCCGGAAATCGGGGGATCCCGGGAGCCTCTTCGGCTTCTCGCTCGCCATGCACTGGCAGTTGCAGCCGGAGGACAAGCGGCT
Seq A exon
GTTGCTTGTGGGGGCACCTCGGGCAGAAGCACTTCCCCTGCAGAAGGCGAACAGAACAGGGGGCCTGTACAGCTGTGACATCACCTCCCGGGGACCTTGCACACGAATTGTATTTGATAATGATG
Seq C2 exon
CTGATCCTATGTCAGAAAGCAAGGAAGACCAGTGGATGGGAGTCACTGTCCAGAGTCAAGGTCCAGGGGGCAAAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001518-'1-1,'1-0,6-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.023 C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGTGCTTGCTCTACCT
R:
CTTTGCCCCCTGGACCTTGA
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]