BtaEX6009021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24175075-24217715:-
Coord C1 exon
chr2:24217534-24217715
Coord A exon
chr2:24176524-24176648
Coord C2 exon
chr2:24175075-24175154
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTGTTTCGTCAACAGATT
3' ss Score
9.92
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ATGGCGGCCGCGGGGCGGCTGTGGCTGCTTTACCTGTCAGTGGGGCTCCTGCCGCGGCTCGGCACCGCCTTCAACTTGGACACCCGCGAGGACAATGTGATCGAGAAAACTGGGGACTCCGGGAGCCTTTTCGGCTTCTCGCTGGCGATGCACTGGCAGCTGCAGCCTGAGGACAAGCGGCT
Seq A exon
ATTGCTCGTGGGGGCTCCCCGTGCAGTGGCCCTTCCACTGCAGAAGGCCAACAGAACAGGAGGCTTGTACAGCTGCGACATCACCTCCCGGGGGCCGTGCACGCGAATTGAATTTGATAACGACG
Seq C2 exon
CTGACCCTTCATCGGAAAGCAAGGAAGATCAGTGGATGGGAGTCACTGTCCAAAGCCAGGGTCCAGGCGGCAAAGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'1-1,'1-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.140 C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGCTTTACCTGTCAGT
R:
CACAACTTTGCCGCCTGGA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]