DreEX6032005 @ danRer10
Exon Skipping
Gene
ENSDARG00000069946 | itga6b
Description
integrin, alpha 6b [Source:ZFIN;Acc:ZDB-GENE-050320-5]
Coordinates
chr1:30215219-30230571:+
Coord C1 exon
chr1:30215219-30215483
Coord A exon
chr1:30230288-30230415
Coord C2 exon
chr1:30230492-30230571
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTTGGTTTACAGGTT
3' ss Score
9.72
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
TCCTCCCTTATAGACATTCACAACCCCACCAGAAGCGGACTGAGTCTCATCTCTAAAGCCAGAACTCACACAAACTGAACCTGAACACAGACATGGAATCTTACAGGACTTTAACCGTACCGCTTCTCAGTTTGTTGGGATTGACGCTGATCTCCGCCTTTAATCTGGACACAGTGAACGTCATCAGGAAAACGGGAGATGCCAACAGCTTGTTTGGGTTCTCCATGGCCATGCACCGACAACTCAGACCAGCTGATAAAAGAAT
Seq A exon
GTTGCTTGTTGGTTCCCCAAAGGCAAAAGCATTGCCCAATCAGAGGTCAAAAATTACAGGAGGCTTGTACAACTGTGACATAAACATTCCTGGTCAGTCATGCCAGCGAGTAATGTTTGACAATGAAG
Seq C2 exon
AAAACCTGCAGACTGAAAATAAAGAGAACCAGTGGATGGGAGTTACTGTACAGAGCCAGGGTCCTGGTGGAAAGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069946-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACCTGAACACAGACATGG
R:
GGACCCTGGCTCTGTACAGTA
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]