RnoEX0045001 @ rn6
Exon Skipping
Gene
ENSRNOG00000004276 | Itga3
Description
integrin subunit alpha 3 [Source:RGD Symbol;Acc:1310333]
Coordinates
chr10:82879320-82887497:-
Coord C1 exon
chr10:82887096-82887497
Coord A exon
chr10:82879773-82879900
Coord C2 exon
chr10:82879320-82879399
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACCCACCTTCCTTTCCCAGCCT
3' ss Score
8.21
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
ACTGGAGAAGCACCAACCCGGAGCAGACGTGAGACTGACCTGGACTAGGGCAAAAAAATTGCCGGAGTCCCGGCGCAGCGGCTCTGCGGGCTCGGGTGTCCTCTGGCGGCGCCTGGAGCAGGTGAACCGTTCATCACTTCCCGGTGCTGAGCCCTCTAGCGATTTCGCCGGGCTCGGTTCAGCCCGGCCCGCAGCCATGGGCCCTGGCCCGCGCCGCGTGCCCCGCGACCCTGGCTGGATGCTCCGCGCCCTGGCTTTGATGGTGGCGGCTAGTGGCCGGGTCGCCTTCGCTTTCAACCTGGACACCAAATTCCTGGTGGTGAAGGAGGCGGTGAACCCTGGTAGCCTCTTTGGCTACTCCGTCGCCCTCCATCGGCAGACTGAGCGACAGCAGCGCTACCT
Seq A exon
CCTTCTGGCCGGTGCACCCCGAGACCTCGCAGTGGATGATGACTACACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACTGCCCTCAAGAACGATTGTGAACGCATGGACATTTCAGAGAAGA
Seq C2 exon
GTGACCCTGACCATCACATTATTGAGGACATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004276-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGGCTGGATGCTCC
R:
AGGACTCTACCTGCAGGGC
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]