DreEX6017656 @ danRer10
Exon Skipping
Gene
ENSDARG00000037917 | itga3a
Description
integrin, alpha 3a [Source:ZFIN;Acc:ZDB-GENE-090805-3]
Coordinates
chr3:34716264-34747470:+
Coord C1 exon
chr3:34716264-34717009
Coord A exon
chr3:34745080-34745207
Coord C2 exon
chr3:34747373-34747470
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTATACATGTTTCAGGCT
3' ss Score
5.2
5' ss Seq
CAAGTATGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
AAGAGAAAAAAAGTTTGAAAAGCTCTTTTTTAGTCATTCTGAGGTGCCTTAATCAACAAATGTAGTCTAGCTGTAGCTTGTGTCAGTCTGTCCTTCGATGAAGGTGCATGTCAGTGTGTTTCATTCAATGCCCTCCAGTCAGGTTTTTAGCGATGACTGGCGCGAACACCCCGGAAGAATGACGAATATGAACAATCAGTTCACAGCGTCTGAGAAAACCGCTTCTGTTCAGACCCTCATATAATCTTTGTCCTGCACTCTCTCTCTCTCTCTGCGTTTCGCCGAACAAAAACACCGCGGAGACCAACAGAAAAAATGATTGTATTTCACCGCAAAGGACTCCGTTTAACCCTGGTGTTTGTTTTGAGCGCGGCTCGTCTCTGTCAGGCGTTCAACTTGGATGTGAGCTTTGCAGTCGTCAAAGAGGGAAAAACAGCAGGCAGTTTGTTCGGACTTTCTGTTGCACTGCACGAGCAGGTCGTGAATGAGAAGAGACACAT
Seq A exon
GCTTCTGGTAGGAGCGCCAAAAGAGAAGGCGGAGTCTGGACTGTCAGCCAATGAGACGGGAGATGTTTACGCCTGTCCGATCTCTGCAGACTCCAAAGACTGTGCAAGACTGAACCTCATCAGCTCAA
Seq C2 exon
ATCCTGAAGACAAACCAGACCTTAAAAATTATGTGATAGATGGCATGTGGCTTGGTGTGTCCATAGTCAGTCAGAGTCAACCAGGGGGCCGTGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037917-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCCGTTTAACCCTGGT
R:
CCCCTGGTTGACTCTGACTGA
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]