MmuEX6089022 @ mm10
Exon Skipping
Gene
ENSMUSG00000001507 | Itga3
Description
integrin alpha 3 [Source:MGI Symbol;Acc:MGI:96602]
Coordinates
chr11:95068225-95076714:-
Coord C1 exon
chr11:95076131-95076714
Coord A exon
chr11:95068712-95068839
Coord C2 exon
chr11:95068225-95068304
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACCCGCCTTCCTTTTCCAGCCT
3' ss Score
10.07
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
GGGGGCGCGGCCGGGACCATCTAGGGTGTGGGGTGCTCGGAGCTCGGAACGGTGACCCGTCCACCGAACCAACGTGAGAGTAGATCCACGGATCTGGAAAACGGATTGGAAAAGCACCCGGAGCAGACGTGAAAGTGACCCGGACTAGGGTAAAAAATTGCCTGACTACCGGTGCAGCGGCTCTGCGGGCTCGGGTGTCCTCTGGTGGCGCCTGGAGCAGGTGAACCGTTCATCACTCCCGGTGCTGAGCCCTCTAGCGATTTCGCCCGGCCCCTTACGGCCCGGCCCGCAGCCATGGGCCCCGGCCCCTGCCGCGTGCCCCGCGCCCCTGGCTGGCTGCTCCGCGCTCTGGCCTTGATGGTGGCGGCTTGCGGCCGGGTCGCCTTCGCCTTCAACCTGGACACCCGATTCCTGGTGGTGAAGGAGGCGGTGAACCCCGGTAGCCTCTTCGGCTACTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACAGCGCTACCT
Seq A exon
CCTTCTGGCCGGGGCTCCCCGGGACCTCGCTGTGGGTGATGACTATACCAACCGGACTGGTGCTGTGTACCTGTGTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAA
Seq C2 exon
GTGACCCTGACCATCACATTATTGAGGATATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001507-'1-6,'1-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.083 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTGGCCTTGATGGTG
R:
AGGACTCTACCTGCAGGGC
Band lengths:
235-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types