DreEX0040178 @ danRer10
Exon Skipping
Gene
ENSDARG00000012942 | itgb5
Description
integrin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6022]
Coordinates
chr9:22883738-22886837:+
Coord C1 exon
chr9:22883738-22883833
Coord A exon
chr9:22884766-22884855
Coord C2 exon
chr9:22886703-22886837
Length
90 bp
Sequences
Splice sites
3' ss Seq
CAAAGTCTTTTTAATCCTAGAAC
3' ss Score
4.01
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GACTATCCTTCTCTGGCACTGCTTGGAGAAAAACTGGCTGAAAACAATATTTTCCTGATCTTCGCTGTTATAAAAAGACACTACGTTCTTTACAAG
Seq A exon
AACCTCACTGCGTTGATCCCTGGGACTACAGTGGAAATTTTGGACCAGGACTCCAAAAACATCATTCAACTAATTGTGAATGCCTACAAT
Seq C2 exon
AACATAAGGTCAAAAGTTGAGCTGAGCGTGTGGGATCATCCTGAAGATCTCAGTCTGGCCTTCTCCGCTACCTGTCAAGATGGACAGCCCCTGACCGGTCTCCGCAAGTGCGCCGACCTCAAAATTGGTGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012942-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.2=100)
A:
PF0036213=Integrin_beta=FE(6.7=100)
C2:
PF0036213=Integrin_beta=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTGGCACTGCTTGGAG
R:
TCCATCTTGACAGGTAGCGGA
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]