RnoEX0045240 @ rn6
Exon Skipping
Gene
ENSRNOG00000001795 | Itgb5
Description
integrin subunit beta 5 [Source:RGD Symbol;Acc:628869]
Coordinates
chr11:70096410-70104974:-
Coord C1 exon
chr11:70104879-70104974
Coord A exon
chr11:70103131-70103220
Coord C2 exon
chr11:70096410-70096544
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTGTTTTTGAAGAAT
3' ss Score
7.52
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GACTATCCATCGCTTGCCTTGCTTGGGGAGAAGCTGGCAGAGAACAATATCAACCTCATCTTTGCAGTGACGAAGAACCACTATATGCTCTACAAG
Seq A exon
AATTTTACAGCCCTGATACCTGGAACCACTGTGGAGATTTTGCATGGAGATTCCAAAAATATTATTCAACTGATTATCAATGCGTACAGT
Seq C2 exon
AGCATCCGGGCTAAAGTGGAGCTGTCGGTCTGGGATCAGCCGGAAGACCTTAATCTCTTCTTCACTGCTACGTGCCAAGATGGCCTATCCTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATCGGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001795-'17-11,'17-10,18-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCTGGCAGAGAACAA
R:
TCACACTTCCTCTGACCAGGG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]