MmuEX6062082 @ mm10
Exon Skipping
Gene
ENSMUSG00000022817 | Itgb5
Description
integrin beta 5 [Source:MGI Symbol;Acc:MGI:96614]
Coordinates
chr16:33900510-33910599:+
Coord C1 exon
chr16:33900510-33900605
Coord A exon
chr16:33902794-33902883
Coord C2 exon
chr16:33910465-33910599
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTGTGTTTTTCAAGAAT
3' ss Score
6.1
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GACTATCCATCGCTTGCCTTGCTTGGGGAGAAGCTGGCAGAGAACAATATCAACCTCATTTTTGCTGTGACGAAGAACCACTATATGCTCTACAAG
Seq A exon
AATTTTACAGCCCTGATACCTGGAACCACTGTGGAGATTTTGCATGGAGATTCCAAAAATATTATTCAACTGATTATCAATGCGTACAGT
Seq C2 exon
AGCATCCGGGCTAAAGTGGAGCTGTCAGTGTGGGATCAGCCAGAAGACCTTAATCTCTTCTTCACTGCCACCTGCCAAGATGGCATATCTTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022817-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.2=100)
A:
PF0036213=Integrin_beta=FE(6.8=100)
C2:
PF0036213=Integrin_beta=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATCCATCGCTTGCCTTGC
R:
GCAGGTGGCAGTGAAGAAGAG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types