HsaEX0032475 @ hg19
Exon Skipping
Gene
ENSG00000082781 | ITGB5
Description
integrin, beta 5 [Source:HGNC Symbol;Acc:6160]
Coordinates
chr3:124527869-124538681:-
Coord C1 exon
chr3:124538586-124538681
Coord A exon
chr3:124536468-124536557
Coord C2 exon
chr3:124527869-124528003
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTTTTTTTCCCAAGAAT
3' ss Score
6.35
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GACTATCCATCCCTTGCCTTGCTTGGAGAGAAATTGGCAGAGAACAACATCAACCTCATCTTTGCAGTGACAAAAAACCATTATATGCTGTACAAG
Seq A exon
AATTTTACAGCCCTGATACCTGGAACAACGGTGGAGATTTTAGATGGAGACTCCAAAAATATTATTCAACTGATTATTAATGCATACAAT
Seq C2 exon
AGTATCCGGTCTAAAGTGGAGTTGTCAGTCTGGGATCAGCCTGAGGATCTTAATCTCTTCTTTACTGCTACCTGCCAAGATGGGGTATCCTATCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082781_MULTIEX1-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(21.9=100),PF0036213=Integrin_beta=PU(4.3=12.1)
A:
PF0036213=Integrin_beta=FE(26.5=100),PF0036213=Integrin_beta=PU(0.1=0.0)
C2:
PF0036213=Integrin_beta=PD(2.1=6.5),PF0036213=Integrin_beta=FE(48.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATCCCTTGCCTTGCTTG
R:
AGGATACCCCATCTTGGCAGG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)