GgaEX6042969 @ galGal3
Exon Skipping
Gene
ENSGALG00000011778 | F1NME2_CHICK
Description
NA
Coordinates
chr7:29481037-29484092:-
Coord C1 exon
chr7:29483997-29484092
Coord A exon
chr7:29483304-29483393
Coord C2 exon
chr7:29481037-29481171
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCACTTGTTGTCTTTTCAAGAAC
3' ss Score
8.01
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GATTACCCTTCCCTGGCACTCCTTGGGGAGAAACTGGCTGAAAACAACATCCACCTGATATTCGCTGTTACAAAAAGCCACTATGTCCTGTACAAG
Seq A exon
AACTTCACTGCTTTGATTCCTGGGACCACAGTGGAGATTTTGCATAAGGACTCCAAGAATATCATCGAGCTGATCGTCAAGGCCTACAAC
Seq C2 exon
AGCATTCGGTCCAAAGTAGAACTCACTGTCTGGGACAGCCCTGAGGACATTGGCTTGACCTTCACTGCCACCTGCCAGGATGGATTGTCCTATCCTGGGCTCAGAAAATGTGGAGATCTCAAGATAGGAGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011778-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.2=100)
A:
PF0036213=Integrin_beta=FE(6.8=100)
C2:
PF0036213=Integrin_beta=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCCTTCCCTGGCACTCC
R:
CAGGTGGCAGTGAAGGTCAAG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]