DreEX0040197 @ danRer10
Exon Skipping
Gene
ENSDARG00000044318 | itgb7
Description
integrin, beta 7 [Source:ZFIN;Acc:ZDB-GENE-100728-2]
Coordinates
chr6:39707856-39712728:-
Coord C1 exon
chr6:39712511-39712728
Coord A exon
chr6:39709682-39709889
Coord C2 exon
chr6:39707856-39708031
Length
208 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTGTTTGTTGCAGGTA
3' ss Score
10.49
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTGTGACGAAGGGTACTTGGGTCAGAACTGCAGTTGCGTGCAACAGAACGATACCATCAAAATGCTGGATTCCTGCCGGCCCAACAACAGATCACTTGTTTGCAGTGGCCAAGGATCCTGTGAATGTGGCAATTGTGTGTGTAGAAACGAGTACAGCGGAAAATACTGTGAGTGTGATCCTGACAGCTGTGAAAAACGCAATGGAGTGAGATGCAATG
Seq A exon
GTAAAGGCAAATGCGAGTGTGGTAAATGTGAATGTAGAGACCGATATACGGGTTCCGCGTGCGAGTGCTCACCTAGCCAAGACAAGTGTAAGAATGATTGGGGCCTTTGCAGTGGTCAAGGGGAATGTGTTTGCAACCGCTGTCATTGTAAACCAGGCGTCATTGGAGATTACTGCTCTGCTTTCATGGACGCTTGCGAGCTGTTCAA
Seq C2 exon
GGACTGTTTGGCATGTCATTTGGAAGGTAGCGGCTCCTGTCATGAGAGATGTTTCAATGCTACAGTAAAACATCTTGAAGGCACTCATGAATTGTCTTGCATATATAAACACGTTTCATACAGTGTGGAGCTTAAGGCCAGTGGCGAAGTTAATGTTAAATATGCAGACCTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044318-'11-13,'11-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=43.2),PF079748=EGF_2=PU(32.3=13.5)
A:
PF079748=EGF_2=PD(64.5=28.6),PF079748=EGF_2=WD(100=42.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATGCTGGATTCCTGCCG
R:
CTGGCCTTAAGCTCCACACTG
Band lengths:
302-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]