DreEX0040206 @ danRer10
Exon Skipping
Gene
ENSDARG00000040985 | itgbl1
Description
integrin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-050522-410]
Coordinates
chr9:31941882-31971697:+
Coord C1 exon
chr9:31941882-31942104
Coord A exon
chr9:31944809-31945011
Coord C2 exon
chr9:31971551-31971697
Length
203 bp
Sequences
Splice sites
3' ss Seq
AATGCGTTTGTGTCTTGCAGGCA
3' ss Score
10.34
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCATTCATATGGAGTGCGCTGTTGGCCTCTGAAACGTCGGAGCTAGATTTGGCCAGCCCGTTCTCCCTCTGTTTTGGAAAGTGGAAATTCCTGAAGGCACTTCACTTCAGGTTTCTGGTGGGGATCTAAACATGCATGCAGAGACTTTGGTGAACTCCGTCTTAGTTTCTTTGCTTTTCATCTTGCTCTCTGCCATTCGAGGAAGTTTACAGCAGTCGCTAAG
Seq A exon
GCAGGTGGGTGGAGAGTGTAAGATCTCTCCTGAATCATCGCTGAGGCGCTGTCGGACCTCCGACGGCTTGATCTGTAGCGGGAGAGGCACATGCGAGTGTGGAATCTGCATATGCCAGGTCACAGAACCAGGAACGTTCTATGGACCGCGGTGTGAATGCCACGACTGGGTCTGTCCTACATATGATGGAAAGACCTGTGGGG
Seq C2 exon
ATCATGGGATATGCAACTGTGGCAAGTGTTTCTGTGATGAAAACTGGTTTGGTGAATCCTGTCAGTACGAGGAGGAGTGTTCGCTCTCCAGCAAAACCAGCAAAGACCTCTGCCGCAATGCTCAGGGTGTAGTTTGCTCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040985-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=50.7),PF079748=EGF_2=PU(32.3=14.5)
C2:
PF079748=EGF_2=PD(64.5=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTTCTCCCTCTGTTTTGG
R:
GGAGCAAACTACACCCTGAGC
Band lengths:
307-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]