MmuEX0024694 @ mm10
Exon Skipping
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:123659971-123827898:+
Coord C1 exon
chr14:123659971-123660406
Coord A exon
chr14:123661291-123661508
Coord C2 exon
chr14:123827752-123827898
Length
218 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTATCTCCTGCAGAAG
3' ss Score
10.46
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGTACTTGAAGAAAGACAAGATTTTCTCAAATCTGTGAACAGGACACTTTTTTAAAATGTCAAAATAAACCATCTGCTTGTACAACTGTTTCTAATTACTTCCCTGCCTAGACTCTCCACTGGAGGAGTTTGGCACCCGCACCCCGCCCAAAGCGGATCCACTGCCCAAGTCTTCGCAGGCAACTGAGCTTCCAGGAGGAGCCCAGAACCTGTGAGCTCCGCTATCCCAAGTCCTTCTGCCTGGACATCTGCTGGTGACACTTCCTCCTGCTGCCTCGGGTGGAAGCCCCACCTAGCAGCAGTGCAGCTGGTCTGCCCTCCCTCCTGCAGAGCTCAGCATGCATCCTCCAGGCTTCAGGAACTTCTTGTTGCTGGTGTCCTCCCTTCTCTTCATTGGGCTGTCAGCTGCTCCTCAAAGCTTCTTACCATCTCTGAG
Seq A exon
AAGCCTGTCGGGCGCCCCCTGCAGGCTGTCCCGGGCAGAGTCCGAACGCAGATGTCGTGCACCTGGGCAGCCCCCAGGGAGCGCTCTGTGCCATGACCGTGGCCGGTGCGAGTGTGGGGTCTGCATCTGTCACGTGACCGAACCTGGCACCTACTTCGGTCCACTGTGTGAGTGCCATGAGTGGATATGCGAGACCTACGACGGGAAAACCTGTGCAG
Seq C2 exon
GCCACGGTAATTGTGACTGCGGCAAGTGCAAGTGTGATGTGGGATGGTCTGGGGAAGCTTGTCAGTACCCAACCAAGTGTGACCTGACCAAAAAAATCAGCAACCAGATGTGCAAGAACTCCCAAGATGTCATCTGCTCCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925-'0-32,'0-1,1-32
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=52.7),PF079748=EGF_2=PU(32.3=13.5)
C2:
PF079748=EGF_2=PD(64.5=40.0),PF079748=EGF_2=PU(33.3=24.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCTGGACATCTGCTG
R:
GGTCAGGTCACACTTGGTTGG
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types