RnoEX0045268 @ rn6
Exon Skipping
Gene
ENSRNOG00000004516 | Itgbl1
Description
integrin subunit beta like 1 [Source:RGD Symbol;Acc:1560635]
Coordinates
chr15:110114148-110234864:+
Coord C1 exon
chr15:110114148-110114337
Coord A exon
chr15:110115184-110115401
Coord C2 exon
chr15:110234718-110234864
Length
218 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTATCTCCTGCAGAAG
3' ss Score
10.46
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCTGGTGACACTTCTTCCTCCTGCTGCCTCGGGTGGAAGCCCCAGCTAGCAGCAGTGCAGCTGGTCTGCCCTCCCGCCTGTACAGCTCAGCATGCATCCCCCAGGCTTTAAGAACTTCTTGTTGCTGGTGTCCTCCCTTTTCTTCATTGGGCTGTCAGCTGCACCTCAAAGCTTCTCACCATCTCTGAG
Seq A exon
AAGCCTGTCGGGCGCCCCCTGCAGGCTGTCCCGGGCAGAGTCCGAGCGCAGATGTCGTGCACCTGGGCAGCCCCCAGGGAGCGCTCTGTGCCATGACCGTGGCCGGTGCGAGTGTGGGGTGTGCATCTGTCACGTGACTGAACCTGGCACCTACTTTGGGCCACTGTGTGAGTGCCATGACTGGGTCTGCGAGACCTACGACGGGAAAACCTGTGCAG
Seq C2 exon
GCCACGGTACTTGTGACTGCGGCAAGTGTAAGTGTGATGTGGGATGGTCTGGGGAAGCTTGCCAGTACCCGACCAAGTGCGACCTGACCAAAAAAATAAGCAACCAGATGTGCAAGAACTCTCAAGATGTCATCTGCTCCAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004516-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=PU(32.3=13.5)
C2:
PF079748=EGF_2=PD(64.5=40.0),PF079748=EGF_2=PU(33.3=24.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTTCTTCCTCCTGCTGC
R:
AGTTCTTGCACATCTGGTTGCT
Band lengths:
303-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]