HsaEX1018055 @ hg38
Exon Skipping
Gene
ENSG00000198542 | ITGBL1
Description
integrin subunit beta like 1 [Source:HGNC Symbol;Acc:HGNC:6164]
Coordinates
chr13:101452593-101567845:+
Coord C1 exon
chr13:101452593-101452931
Coord A exon
chr13:101453883-101454100
Coord C2 exon
chr13:101567699-101567845
Length
218 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTGTCGCCCGCGCAGGAG
3' ss Score
6.17
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTCTCCACTGAGGGGTTTGGCACCAGCACCCCGCCCAGAGCAGTGCCGCTGCCCAAATCCTCGCAGGCAGCTCATCAACGCAATTGCAACTCCGGCTGGAGCCCCGGACCTGCAAGCCTGGGTGTCCGTGGGTCCGTCTGCCCAGCCATCTGCTGGTGGCACCTCTCCCTCCTGCCGCCTCCCTCGGTGAACCCCACCTTGCAGAAGTGCAGCTCGCCCGGAGCAGCCCAGGAGCTCAGCATGCGTCCCCCAGGCTTCAGGAACTTCTTGCTGCTGGCGTCCTCCCTTCTCTTTGCTGGGTTGTCAGCTGTTCCTCAAAGCTTCTCGCCATCTCTGAG
Seq A exon
GAGCTGGCCGGGCGCCGCCTGCAGGCTGTCCCGGGCCGAGTCGGAGCGACGCTGCCGCGCACCTGGGCAGCCCCCGGGGGCCGCGCTGTGCCACGGCCGGGGCCGCTGCGACTGCGGCGTCTGCATCTGCCACGTGACTGAGCCGGGCATGTTCTTCGGGCCCCTGTGTGAGTGCCATGAGTGGGTGTGCGAGACCTACGACGGGAGCACCTGTGCAG
Seq C2 exon
GCCATGGTAAGTGTGACTGTGGCAAGTGCAAGTGTGACCAGGGATGGTATGGGGATGCTTGCCAGTACCCAACTAACTGTGACTTGACAAAGAAGAAAAGTAACCAAATGTGCAAGAATTCACAAGACATCATCTGCTCTAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198542_MULTIEX1-2/5=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=52.7),PF079748=EGF_2=PU(32.3=13.5)
C2:
PF079748=EGF_2=PD(87.0=40.0),PF079748=EGF_2=PU(33.3=24.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTCATCAACGCAATTG
R:
CTTGCACTTGCCACAGTCACA
Band lengths:
305-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains