GgaEX7001193 @ galGal4
Exon Skipping
Gene
ENSGALG00000016867 | ITGBL1
Description
integrin, beta-like 1 (with EGF-like repeat domains) [Source:HGNC Symbol;Acc:HGNC:6164]
Coordinates
chr1:142690236-142746630:-
Coord C1 exon
chr1:142745907-142746630
Coord A exon
chr1:142744542-142744753
Coord C2 exon
chr1:142690236-142690382
Length
212 bp
Sequences
Splice sites
3' ss Seq
CTCTTGACTTTCCTTCTCAGGAG
3' ss Score
9.49
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTACAGGGCACATCCCAAACAACCATCTGTCAAAGGACGTGGGGATACGCATACCTCAAATATTTACGGTGCCTGCACTTTGAGACTGAGACGGTTCACTCACATCTGTGTGCGGGCCACTTTTAAAACATCAAAATAAACCATCTGGCTGCGCAACTGTTTCTAATTACTTCCCTGCCTAGACTGTAAACTTCAGGGTTTGGCACCGGCCTCCCTCCCAGAGCGCTGCCCAAATCCCGCTCCCAGGCAGCTAATCACCGCCACTGCAGCGCGGGGGGAGCAGCCCTGGAGCTGGGCTTGTCCAGCTCACAGCTCTCCACACGCCCAGCGGCTCCGTCCGTCCATCCGTCTGTCCATCCGTTGTCTGTCCATCTATCCAAGGGAGGCAGCAGGAGCACAGCTGGCACGATGCATGCGCGGGGGCTGCTGGGACTGGTGTTGCTGATGGTGTCAGTGGGCTCCCTGCCCAGTTTGCGGCCTGCCACCCCCCCAGCCCTGAG
Seq A exon
GAGCTCCTTGGGCAGCCCTGTTTTGTGCCTCCTGCCCCGTGCTGAGGCAGAGCTCCGGTGCCGTGTCCCAGGGGGCCCACTGTGCAGCGGCAGGGGCAGGTGCGACTGTGGGGTCTGCATCTGCCAAGTGACGGAGGCTGGCAAATACTATGGGCCGCTGTGCGAGTGCCAAGACTGGGTGTGTGAGATCTACGACGGGAAGGTCTGTGCAG
Seq C2 exon
GCCATGGAAAGTGTGACTGTGGGAAGTGCAAATGTGATGAAGGCTGGTATGGTGAGGCTTGTCAGTATCCAACTACTTGCAATCTTACACGGAAGAAAAGCAATGAAATGTGTAAGAATTCTCAAGATATCATCTGCTCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016867-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=48.6),PF079748=EGF_2=PU(32.3=13.9)
C2:
PF079748=EGF_2=PD(64.5=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGGCAGCTAATCAC
R:
TTGCACTTCCCACAGTCACAC
Band lengths:
293-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]