DreEX0040903 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:21011909-21033488:+
Coord C1 exon
chr19:21011909-21012108
Coord A exon
chr19:21024797-21025046
Coord C2 exon
chr19:21033274-21033488
Length
250 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTCCACTCTCTCCAGCTT
3' ss Score
6.93
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
CGTTGATGCACGCTCTGGTCTTCGGTAATGTGACAGCCATCATTCAGCGCATGTACTCCCGTTGGTCCTCTTACCACACGCGCACTAAAGACCTGAAGGACTTCATCCGTGTACACCACCTGCCTCAGAGCCTCAAACAGCGCATGTTGGAGTACTTTCAGACCACCTGGTCTGTCAACAACGGCATTGACTCCAATGAG
Seq A exon
CTTCTAAGAGATTTTCCGGATGAGTTGCGTTCGGACATTGCAATGCACCTGAATAAAGAGATCCTAGAGCTGTCGGTCTTCTCGTCTCTGAGTCGTGGGTGTCTCCGCTCTCTCTCTCTGCACATAAAGACTTCCTTCTGCGCACCGGGCGAGTACCTTCTGCGTCAGGGAGATGCTCTACAGGCCCTTTTCTTCGTCTGCTCTGGCTCTATGGAGGTGCTCAAGGACAACATGGTGCTTGCCATTCTCG
Seq C2 exon
GTAAAGGTGACCTGATTGGTGCAAACATGTCGGTTGGTGACCGTGTCATAAAGACGAATGCTGATGTGAAGGCGCTAACCTACTGCGACCTACAGTGCATTAATCTGAGGGGTCTGTATGAGGTGCTGGATCTGTATCCTGAATACTCTCACCGGTTTGTGCAGGATATCACACATGACCTCACCTACAACCTGAGAGAGGGCCAAGAGAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACAGCCATCATTCAGCG
R:
AGCACCTCATACAGACCCCTC
Band lengths:
299-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]