DreEX0043701 @ danRer10
Exon Skipping
Gene
ENSDARG00000094171 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14343268-14355876:-
Coord C1 exon
chr22:14355772-14355876
Coord A exon
chr22:14345582-14345695
Coord C2 exon
chr22:14343268-14343344
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGTTGCGTGTTCTCCTCAGTTG
3' ss Score
7.36
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGTACGAATGGCAGGATTGCAGCCAGCTGTCAGCTGTGTGACGGATACTGTTATAACGGAGGAACCTGCCACCTCGACTCTGAAACTGGCCTGCCGTTCTGTCA
Seq A exon
TTGCCCGTCCGAGTTTAAAAGCCCGAGGTGTGACGAGAGATCAAACCCTTGCGATCACTACTGTCAGAACCAGGGCGTTTGTTCCCTCACCGCCTATAACAAACCCCGCTGCAA
Seq C2 exon
GTGCTCTGGAAACTGGTCAGGAACGCAGTGTGAAAGACCTGCAACCAAGACCAACCGCTTGGAAAATGTCAGCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094171_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF151021=TMEM154=PU(12.6=30.8)
C2:
PF151021=TMEM154=FE(27.4=100),PF118573=DUF3377=PU(22.4=40.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATTGCAGCCAGCTGTC
R:
TCCCGCTGACATTTTCCAAGC
Band lengths:
170-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]