DreEX0043702 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36616993-36634551:+
Coord C1 exon
chr9:36616993-36617109
Coord A exon
chr9:36631586-36631666
Coord C2 exon
chr9:36634381-36634551
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCCATTCACACAGCGT
3' ss Score
7.53
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTCAGCCATGTCGGGCTGGTCAGTTTACCTGTGGTAATGGACGCTGTGTCCCAGAAGCCTGGCGCTGCGATCAGGATGATGATTGTGGAGACATGTCAGACGAGTCTACGTCCTGCT
Seq A exon
CGTTTCCAACCTGCGAAGCTCTCAGCCAGTTCAGCTGTGCTAATGGCAGGTGCATTAGCATGAAGTGGCATTGTGACTCAG
Seq C2 exon
ATGATGACTGTGGAGATAACAGTGATGAGGCAGGCTGTGTTCACTTCTGTGCTAATGGCCAGTATAAGTGCACCAGCGGCAGGTGTATCCCGGACCACTGGGCCTGTGACGGAGACAACGACTGTGGAGACTTCAGTGATGAAAATGTGACGTGTGCTGGAGTTGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
PF0005713=Ldl_recept_a=PU(63.2=88.9)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTCAGTTTACCTGTGG
R:
CCGCTGGTGCACTTATACTGG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]