MmuEX6101026 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41408235-41418522:-
Coord C1 exon
chr2:41418422-41418522
Coord A exon
chr2:41408902-41408982
Coord C2 exon
chr2:41408235-41408402
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTACATCTTTCGCAGAAT
3' ss Score
9.43
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
AAACTGAGTTGAATTTAGATTTATTCTTTCTTTCCTTCTTTCTTCCTTCCTTCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
AATTTCCAACCTGTGAGCCTCTGACTCAGTTCATATGCAAGAGTGGGAGATGCATCAGCAACAAATGGCACTGCGACACTG
Seq C2 exon
ATGATGACTGTGGAGACAGGAGTGATGAGGTGGGCTGTGTTCACTCCTGCCTTGATGACCAGTTCAGATGTTCAAGTGGCCGGTGTATCCCAGGGCACTGGGCCTGTGATGGTGACAATGACTGCGGAGACTTCAGTGATGAAACACATATCAATTGTACAAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'37-32,'37-31,38-32
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTTTCTTCCTTCCTTCCT
R:
CACCATCACAGGCCCAGTG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types