RnoEX6016695 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:26024509-26049703:-
Coord C1 exon
chr3:26049587-26049703
Coord A exon
chr3:26025699-26025779
Coord C2 exon
chr3:26024509-26024676
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTACATCTTTCACAGAAT
3' ss Score
9.35
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
CCAGAACTTGTCAAGCTGACCAATTTTCTTGTGGAAATGGGCGCTGCATTCCTACAGCATGGGTATGTGACCGAGAGGATGACTGTGGTGACCAGACAGATGAAGTGACATCCTGTG
Seq A exon
AATTTCCAACCTGTGAACCACTGACTCAGTTCCTATGCAAGAGTGGGAGATGTATCAGCAACAAATGGCACTGTGACACTG
Seq C2 exon
ATGATGACTGTGGGGACCGGAGTGATGAGGTGGGCTGTGTTCACTCTTGCCTTGATGACCAGTTCAGATGTGCGAGCGGCCGGTGTATACCAGGGCACTGGGCCTGTGATGGTGACAATGACTGCGGAGACTTCAGCGATGAGACACACGTCAACTGTACCAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGACTGTGGTGACCAGA
R:
CCGCAGTCATTGTCACCATCA
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]