HsaEX0036419 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141680534-141739845:-
Coord C1 exon
chr2:141739729-141739845
Coord A exon
chr2:141709429-141709509
Coord C2 exon
chr2:141680534-141680716
Length
81 bp
Sequences
Splice sites
3' ss Seq
CATTTTTATATCTTTCACAGAAT
3' ss Score
8.59
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
CCAGAACATGCCAGGTAGACCAGTTTTCTTGCGGAAATGGGCGTTGCATTCCCAGAGCATGGCTGTGTGACAGGGAAGACGACTGTGGTGACCAGACAGATGAAATGGCATCTTGTG
Seq A exon
AATTCCCAACTTGTGAGCCACTAACCCAATTCGTATGCAAAAGTGGAAGATGCATTAGCAGCAAATGGCACTGCGACTCTG
Seq C2 exon
AGATTCATTCTCCTGCTGGTTGTAACGGAAATGAATTTCAGTGCCACCCTGATGGTAATTGCGTTCCTGATTTGTGGCGCTGTGATGGAGAAAAAGACTGTGAAGATGGTAGTGATGAAAAAGGTTGCAATGGTACCATACGATTGTGTGACCACAAAACCAAGTTTTCCTGTTGGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702_MULTIEX1-1/12=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTTGCGGAAATGGGCG
R:
CATCACAGCGCCACAAATCAG
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)