HsaEX0036419 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140950235-140970814:-
Coord C1 exon
chr2:140970714-140970814
Coord A exon
chr2:140951860-140951940
Coord C2 exon
chr2:140950235-140950402
Length
81 bp
Sequences
Splice sites
3' ss Seq
CATTTTTATATCTTTCACAGAAT
3' ss Score
8.59
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
GAGCCAGGAGTGTTCCATTACACTGCAGCTTGGGCAACAGAGCAAGACCCTCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
Seq A exon
AATTCCCAACTTGTGAGCCACTAACCCAATTCGTATGCAAAAGTGGAAGATGCATTAGCAGCAAATGGCACTGCGACTCTG
Seq C2 exon
ATGACGACTGTGGGGACGGGAGTGATGAGGTGGGCTGTGTTCACTCTTGCTTTGATAATCAGTTCAGATGTTCCAGTGGCAGATGCATCCCAGGCCACTGGGCCTGTGATGGTGACAATGACTGTGGGGACTTCAGTGATGAAGCCCAGATCAATTGTACTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'33-56,'33-55,34-56
Average complexity
C3
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0005713=Ldl_recept_a=PU(65.8=89.3)
C2:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACACTGCAGCTTGGGCAA
R:
TGCATCTGCCACTGGAACATC
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development