DreEX0043710 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36770367-36776251:+
Coord C1 exon
chr9:36770367-36770486
Coord A exon
chr9:36773014-36773142
Coord C2 exon
chr9:36776129-36776251
Length
129 bp
Sequences
Splice sites
3' ss Seq
TACTAACAAAAATCATCCAGGCT
3' ss Score
0.9
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
ATTCGTCCTGTCTTTGGAACCAGTTTGCTTGCTCGAAAAACAAATGCATAGCGAAGCAGTGGCTATGTGATGGGGAAGATGACTGTGGTGACGGAGTGGATGAGAGCGTGGATCTTTGCG
Seq A exon
GCTCTGTGACCTGTGCACCGGGGTTGTTCAGCTGTCCAGGCTCGTACGCATGTGTTCCCAAGCGCTGGCTGTGTGATGGGGAGAGAGACTGTCCCGATGGCAGCGATGAGCTTGCGGCAGCCGGCTGTG
Seq C2 exon
CTCCAAATAACACATGTGATGAGAATTCCTTCAGATGCCTTAACAAAGGCTGCATTCCTAAACGCTTCGTATGTGACCATGACAATGACTGCGGAGATGGCTCAGATGAATCGCTTGAATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'51-53,'51-51,52-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.5)
A:
PF0005713=Ldl_recept_a=WD(100=95.3)
C2:
PF0005713=Ldl_recept_a=WD(100=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTCCTGTCTTTGGAACCA
R:
GCATTCAAGCGATTCATCTGAGC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]