HsaEX6015757 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140506796-140514772:-
Coord C1 exon
chr2:140514653-140514772
Coord A exon
chr2:140509928-140510056
Coord C2 exon
chr2:140506796-140506918
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTATGTTTTTGTGTTTCAGGTG
3' ss Score
11.81
5' ss Seq
GCGGTATGA
5' ss Score
7.46
Exon sequences
Seq C1 exon
ATTCTTCTTGCTCTTGGAACCAATTTGCTTGTTCCGCACAAAAATGTATTTCTAAGCATTGGATTTGTGATGGAGAAGATGACTGTGGGGATGGGTTAGATGAAAGTGACAGCATTTGTG
Seq A exon
GTGCCATAACCTGTGCTGCTGACATGTTCAGCTGCCAGGGCTCTCGTGCCTGCGTGCCCCGACATTGGCTTTGTGATGGTGAAAGGGACTGTCCAGATGGAAGCGATGAGCTTTCCACAGCAGGCTGCG
Seq C2 exon
CTCCCAATAATACATGTGATGAAAATGCTTTCATGTGCCATAATAAAGTATGCATTCCCAAGCAATTTGTTTGTGACCATGATGACGACTGTGGAGATGGCTCTGATGAGTCACCGCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'79-111,'79-110,80-111=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.1)
A:
PF0005713=Ldl_recept_a=WD(100=93.2)
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTTGCTCTTGGAACCA
R:
CACACTGCGGTGACTCATCAG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains