GgaEX6043173 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31445108-31447079:-
Coord C1 exon
chr7:31446960-31447079
Coord A exon
chr7:31446171-31446299
Coord C2 exon
chr7:31445108-31445230
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCTCATGTTATTTCTTCAGGTT
3' ss Score
10.97
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATTCGTCCTGCTCGTGGAATCAGTTTGCTTGTTCTGCAGACAAGTGCATCTCTAAGCAATGGACTTGTGATGGTGAGGATGATTGTGGAAATGGTTTAGATGAGAGTGATGCTATTTGTG
Seq A exon
GTTCAGTGACATGTGCTGTGGGAACATTCAGTTGCCTAGGCTCCCACGCCTGTGTTCCTCACCACTGGCTTTGTGATGGTGAAAGAGACTGTCCAAATGGAAGTGATGAGCTCTCTACAGCAGGCTGTG
Seq C2 exon
CCCCTAATAACACTTGTGATGAGAATGCTTTCATGTGCCGTAATAACATCTGCATTCCAAAACAGTTTGTATGTGACCATGATGATGACTGTGGAGATGGATCAGATGAATCACTGGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'68-92,'68-91,69-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.1)
A:
PF0005713=Ldl_recept_a=WD(100=93.2)
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTCCTGCTCGTGGAATC
R:
ACATTCCAGTGATTCATCTGATCCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]