GgaEX6043173 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33558996-33560967:-
Coord C1 exon
chr7:33560848-33560967
Coord A exon
chr7:33560059-33560187
Coord C2 exon
chr7:33558996-33559118
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCTCATGTTATTTCTTCAGGTT
3' ss Score
10.97
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATTCGTCCTGCTCGTGGAATCAGTTTGCTTGTTCTGCAGACAAGTGCATCTCTAAGCAATGGACTTGTGATGGTGAGGATGATTGTGGAAATGGTTTAGATGAGAGTGATGCTATTTGTG
Seq A exon
GTTCAGTGACATGTGCTGTGGGAACATTCAGTTGCCTAGGCTCCCACGCCTGTGTTCCTCACCACTGGCTTTGTGATGGTGAAAGAGACTGTCCAAATGGAAGTGATGAGCTCTCTACAGCAGGCTGTG
Seq C2 exon
CCCCTAATAACACTTGTGATGAGAATGCTTTCATGTGCCGTAATAACATCTGCATTCCAAAACAGTTTGTATGTGACCATGATGATGACTGTGGAGATGGATCAGATGAATCACTGGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'75-84,'75-83,76-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.1)
A:
PF0005713=Ldl_recept_a=WD(100=93.2)
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGTCCTGCTCGTGGAATC
R:
ACATTCCAGTGATTCATCTGATCCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]