MmuEX6101054 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40879465-40886760:-
Coord C1 exon
chr2:40886641-40886760
Coord A exon
chr2:40882140-40882268
Coord C2 exon
chr2:40879465-40879587
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTGGGTTTAAGGTG
3' ss Score
8.85
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
ATTCTTCTTGCTCTTGGAATCAATTTGCTTGTTCTGTAAAAAAATGTATTTCTAAACACTGGATCTGTGATGGAGAGGATGACTGTGGAGACAGCTTAGATGAAAGTGACAGCATTTGTG
Seq A exon
GTGCAGTCACTTGTGCTGCTGACATGTTCAGCTGCCAGGGCTCCCATGCCTGTGTGCCCCAACACTGGCTGTGTGATGGTGAGAGAGACTGTCCCGACGGGAGTGATGAGCTATCCAGTGCAGGCTGTG
Seq C2 exon
CACCCAACAATACATGTGACGAAAATGCTTTCATGTGCCATAATAAGGTGTGCATTCCCAAGCAGTTTGTCTGTGACCATGACGATGACTGTGGAGATGGGTCAGATGAATTCCTACAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'79-78,'79-77,80-78
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.1)
A:
PF0005713=Ldl_recept_a=WD(100=93.2)
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTTGCTCTTGGAATCAATT
R:
CACACTGTAGGAATTCATCTGACCC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types