DreEX0043730 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48885384-48889509:+
Coord C1 exon
chr9:48885384-48885549
Coord A exon
chr9:48885872-48886030
Coord C2 exon
chr9:48889220-48889509
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTGTTTATGCTCAGGTA
3' ss Score
8.89
5' ss Seq
CTTGTAAGA
5' ss Score
4.17
Exon sequences
Seq C1 exon
ATCTGGGAGCTCCTGACGGCATCGCCTATGACTGGATTAACAGGAGGATCTATTACAGTGACTACATTAACCAGACTATCAGCTCTATGGCAGTGGATGGATCTCAGAGGACTGTTGTGGCGCAGGTGCCCAGACCCAGAGCCATCATGCTGGATCCGTGTAGAGG
Seq A exon
GTATATGTACTGGACAGACTGGGGAACCAGTGCAAAGATAGAGCGCGCAACTCTCGGAGGAAACTTCAGGACAGAGATTGTCAACACCAGTCTAGTTTGGCCAAATGGTTTGACGCTGGACTATGATGATCAGAGGCTCTACTGGGCAGATGCCAGCTT
Seq C2 exon
ACAGAAGATTGAGAGGTGCTCGCTCACCGGCACTAACCGTGAGGTCATTGTAAGCACCGCCATTTACCCATTTGCAATGACAGTTTATGATCAGCATATCTACTGGACGGACTGGAACACGCGCAGCATCTACCGCGCAAACAAGCACGACGGGTCTGATCAGAGGGTGATGCTACAAAATCTTCCATCTCGACCCATGGACATCCACGTCTTATCTAACAGCAAACAGCAGCAGTGCAGCAGTCCCTGCGAACAGTTCAACGGTGGATGCAGCCACATTTGCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'41-49,'41-48,42-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=77.8),PF0005812=Ldl_recept_b=PU(23.1=16.7)
C2:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF0005812=Ldl_recept_b=WD(100=40.8),PF146701=FXa_inhibition=PU(37.8=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTATGGCAGTGGATGGA
R:
ATCACCCTCTGATCAGACCCG
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]