RnoEX6017279 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55719056-55720826:-
Coord C1 exon
chr3:55720661-55720826
Coord A exon
chr3:55720197-55720355
Coord C2 exon
chr3:55719056-55719345
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTTTGACTAACTAGGTA
3' ss Score
8.64
5' ss Seq
CTTGTAGGT
5' ss Score
2.94
Exon sequences
Seq C1 exon
ATATAGGGGTGACTGATGGCATTGCCTTTGATTGGATAAATAGAAGAATTTATTACAGTGACTTTTCAAATCAGACAATAAATTCCATGGCTGAAGATGGATCCAATCGTGCTGTGATTGCCCGTGTTTCCAAACCCAGAGCTATTGTATTAGATCCTTGCCGAGG
Seq A exon
GTACATGTATTGGACTGACTGGGGTACCAACGCCAAAATCGAGAGAGCCACACTGGGAGGAAACTTCCGGGTCCCCATTGTGAACACCAGCTTGGTTTGGCCCAATGGACTCGCTTTGGACCTTGAGACTGACCTTCTGTACTGGGCAGATGCTAGCTT
Seq C2 exon
GCAGAAAATAGAACGCAGTACTCTCACGGGCACGAACCGAGAAGTCGTTGTCAGCACTGCCTTTCATTCCTTTGGCTTGACTGTCTATGGCCAGTACATTTACTGGACAGACTTGTACACCAGAAAAATCTACCGTGCTAACAAGTACGACGGGTCAGACCTGGTAGCAATGACCACACGTTTGCCCACCCAGCCTAGTGGTATTTCCACAGTGGTCAAAACCCAGCGGCAGCAGTGTAGCAATCCTTGTGACCAGTTCAACGGAGGATGCAGCCATATCTGTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'51-59,'51-58,53-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=77.8),PF0005812=Ldl_recept_b=PU(23.1=16.7)
C2:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF146701=FXa_inhibition=PU(36.8=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATTGCCCGTGTTTCCAA
R:
TGGGCAAACGTGTGGTCATTG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]