GgaEX1033901 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20264926-20267556:+
Coord C1 exon
chr7:20264926-20265091
Coord A exon
chr7:20265924-20266082
Coord C2 exon
chr7:20267267-20267556
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTCAATCATGTTACTGACAGGTA
3' ss Score
7.06
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
ACCTGGGAACTCCAGATGGCATAGCCTTTGACTGGATCAACAACAGAGTTTACTACAGTGACTACCTCAATCAGACTATCAGCTCAATGGCTGTGGATGGCTCTAACCGCACTGTGATTGCCCGGGTTCCGCGACCGAGAGCTGTAGTATTAGATCCCTGCAGAGG
Seq A exon
GTACATGTACTGGACTGACTGGAGCTCCAATGCAAAGATAGAAAGAGCCACACTTGGAGGAAATTTCAGAACACCTATTGTAAGCACCAATCTGGTATGGCCAAATGGGCTTACCTTGGACTATGAAGAACAGCAGCTATACTGGGCTGATGCAAATCT
Seq C2 exon
GCAAAAAATTGAGCGATGCACTCTAACTGGTACAAACCGTGAGGTAATTGTTAGTACTGCTCTGCATCCATTTGCAATGACGTTGTTTGATCAGCACATATATTGGACAGATTGGAACACACGAAGCATTTACAGAGCTAATAAATATGATGGTTCAGATCAAATTGTAATGATCATGAATCTTCCACAAAGGCCAATGGATATTCACGTCTGGGCAAAAAGTAAGCAGCAGCAGTGTACCAACCCTTGTAACCAGTTCAATGGTGGTTGCAGTCACATTTGTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=77.8),PF0005812=Ldl_recept_b=PU(23.1=16.7)
C2:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF0005812=Ldl_recept_b=WD(100=38.8),PF146701=FXa_inhibition=PU(36.8=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGACCGAGAGCTGTAGTAT
R:
TTGCCCAGACGTGAATATCCA
Band lengths:
255-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]