MmuEX6101918 @ mm9
Exon Skipping
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69319182-69320919:-
Coord C1 exon
chr2:69320754-69320919
Coord A exon
chr2:69320282-69320440
Coord C2 exon
chr2:69319182-69319471
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGTTTGACTAACTAGGTA
3' ss Score
8.23
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
ATATAGGGGTTACTGATGGCATTGCCTTTGACTGGATAAATAGAAGAATTTATTACAGTGACTTTTCAAATCAGACAATAAATTCCATGGCTGAAGATGGATCTAATCGCGCTGTGATCGCCCGTGTTTCCAAACCAAGAGCTATTGTATTAGATCCTTGCCGAGG
Seq A exon
GTACATGTATTGGACTGACTGGGGTACCAATGCCAAAATTGAAAGAGCCACACTGGGAGGGAACTTCCGGGTCCCCATTGTGAACACCAGCCTGGTTTGGCCCAATGGACTCACTCTGGACCTGGAGACCGACCTTCTCTACTGGGCGGATGCTAGCCT
Seq C2 exon
GCAGAAAATAGAGCGCAGTACTCTCACGGGCTCCAACCGAGAAGTTGTCATCAGCACTGCCTTCCATTCCTTTGGCTTAACTGTCTACGGCCAGTACATTTACTGGACAGACTTTTACACCAAAAAAATCTACCGTGCTAACAAGTACGATGGGTCAGACCTGATTGCAATGACCACTCGTTTGCCCACCCAGCCTAGTGGCATCTCCACAGTTGTCAAGACCCAGCAGCAGCAGTGTAGCAATCCTTGTGACCAGTTCAATGGAGGATGCAGCCATATCTGTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070-'46-45,'46-44,48-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=69.6),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=77.8),PF0005812=Ldl_recept_b=PU(23.1=16.7)
C2:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF146701=FXa_inhibition=PU(36.8=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTTACTGATGGCATTGC
R:
CTGGCCGTAGACAGTTAAGCC
Band lengths:
256-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: