DreEX0044257 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35620292-35624755:-
Coord C1 exon
chr19:35624666-35624755
Coord A exon
chr19:35621069-35621161
Coord C2 exon
chr19:35620292-35620369
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACCGTCTCTGATGTCATCAGCAC
3' ss Score
5.4
5' ss Seq
GGAGTACGT
5' ss Score
5.17
Exon sequences
Seq C1 exon
GTGCGGAAACACATCACAGACCTGTATGAGGATCTAAGAGATGGACATAACCTTATTTCCCTGCTGGAGGTGCTGTCCGGTGTCACATTG
Seq A exon
CACAAGGGCGTGTCGACTCTGCGGAGGACATCAGTGTCCCGCGCGCCACCGCTCATCCTGCTGGGTGGGGAGGATGAGGATGGAGCTCAGGGA
Seq C2 exon
CCCAGGGAAAAGGGTCGCATGCGATTTCACAGACTCCAGAATGTCCAGATCGCCTTGGACTTCCTCAAGCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.038
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(22.7=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSDART00000146394fB3675
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGAAACACATCACAGACC
R:
CTGTCTCTGCTTGAGGAAGTCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]